J5_8CG8_007

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

8CG8|1|c|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8CG8_007 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0985

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8CG8|1|c|C|31
8CG8|1|c|U|32
8CG8|1|c|U|33
8CG8|1|c|G|34
8CG8|1|c|U|35
*
8CG8|1|c|A|473
8CG8|1|c|A|474
8CG8|1|c|A|475
8CG8|1|c|U|476
8CG8|1|c|A|477
8CG8|1|c|A|478
8CG8|1|c|C|479
*
8CG8|1|c|G|509
8CG8|1|c|G|510
8CG8|1|c|A|511
8CG8|1|c|A|512
8CG8|1|c|U|513
8CG8|1|c|G|514
*
8CG8|1|c|C|543
8CG8|1|c|A|544
8CG8|1|c|A|545
8CG8|1|c|U|546
*
8CG8|1|c|A|592
8CG8|1|c|U|593
8CG8|1|c|A|594
8CG8|1|c|G|595

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S30-A

Chain m

40S ribosomal protein S9-A

Chain z

40S ribosomal protein S23-A