J5_8CGD_003
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 8CGD|1|a|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8CGD_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0392
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8CGD|1|a|C|584
8CGD|1|a|G|585
8CGD|1|a|A|586
8CGD|1|a|C|587
8CGD|1|a|U|588
8CGD|1|a|U|589
*
8CGD|1|a|A|668
8CGD|1|a|G|669
8CGD|1|a|A|670
8CGD|1|a|C|671
*
8CGD|1|a|G|809
8CGD|1|a|U|810
8CGD|1|a|U|811
8CGD|1|a|C|812
*
8CGD|1|a|G|1195
8CGD|1|a|C|1196
*
8CGD|1|a|G|1250
8CGD|1|a|C|1251
8CGD|1|a|G|1252
8CGD|1|a|A|1253
8CGD|1|a|A|1254
8CGD|1|a|U|1255
8CGD|1|a|G|1256
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain e
- Large ribosomal subunit protein uL4
- Chain k
- 50S ribosomal protein L15
- Chain p
- Large ribosomal subunit protein bL20
- Chain q
- Large ribosomal subunit protein bL21
Coloring options: