J5_8CGD_006
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8CGD|1|a|U|2076, 8CGD|1|a|G|2428, 8CGD|1|a|G|2429, 8CGD|1|a|A|2430, 8CGD|1|a|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8CGD_006 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0762
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8CGD|1|a|U|2074
8CGD|1|a|U|2075
8CGD|1|a|U|2076
8CGD|1|a|A|2077
*
8CGD|1|a|U|2243
8CGD|1|a|U|2244
8CGD|1|a|U|2245
8CGD|1|a|G|2246
*
8CGD|1|a|C|2258
8CGD|1|a|U|2259
*
8CGD|1|a|A|2281
8CGD|1|a|G|2282
*
8CGD|1|a|C|2427
8CGD|1|a|G|2428
8CGD|1|a|G|2429
8CGD|1|a|A|2430
8CGD|1|a|U|2431
8CGD|1|a|A|2432
8CGD|1|a|A|2433
8CGD|1|a|A|2434
8CGD|1|a|A|2435
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain c
- Large ribosomal subunit protein uL2
- Chain k
- 50S ribosomal protein L15
- Chain v
- Large ribosomal subunit protein bL27
- Chain w
- Large ribosomal subunit protein bL28
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