J5_8CGN_007

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

8CGN|1|c|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8CGN_007 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0697

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8CGN|1|c|C|31
8CGN|1|c|U|32
8CGN|1|c|U|33
8CGN|1|c|G|34
8CGN|1|c|U|35
*
8CGN|1|c|A|473
8CGN|1|c|A|474
8CGN|1|c|A|475
8CGN|1|c|U|476
8CGN|1|c|A|477
8CGN|1|c|A|478
8CGN|1|c|C|479
*
8CGN|1|c|G|509
8CGN|1|c|G|510
8CGN|1|c|A|511
8CGN|1|c|A|512
8CGN|1|c|U|513
8CGN|1|c|G|514
*
8CGN|1|c|C|543
8CGN|1|c|A|544
8CGN|1|c|A|545
8CGN|1|c|U|546
*
8CGN|1|c|A|592
8CGN|1|c|U|593
8CGN|1|c|A|594
8CGN|1|c|G|595

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S30-A

Chain m

40S ribosomal protein S9-A

Chain z

40S ribosomal protein S23-A