J5_8CIV_001
3D structure
- PDB id
- 8CIV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8CIV|1|CC|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8CIV_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.056
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8CIV|1|AA|A|20
8CIV|1|AA|G|21
8CIV|1|AA|G|22
*
8CIV|1|CC|C|35
8CIV|1|CC|G|36
8CIV|1|CC|A|37
8CIV|1|CC|U|38
8CIV|1|CC|G|39
8CIV|1|CC|A|40
8CIV|1|CC|A|41
8CIV|1|CC|G|42
*
8CIV|1|CC|U|102
8CIV|1|CC|G|103
8CIV|1|CC|A|104
8CIV|1|CC|A|105
8CIV|1|CC|C|106
8CIV|1|CC|G|107
*
8CIV|1|CC|C|115
8CIV|1|CC|G|116
*
8CIV|1|CC|C|137
8CIV|1|CC|A|138
8CIV|1|CC|U|139
Current chains
- Chain AA
- 25S ribosomal RNA
- Chain CC
- 5.8S ribosomal RNA
Nearby chains
- Chain J
- 60S ribosomal protein L25
- Chain QQ
- 60S ribosomal protein L15-A
- Chain T
- 60S ribosomal protein L35-A
- Chain V
- 60S ribosomal protein L37-A
- Chain X
- 60S ribosomal protein L39
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