J5_8CKU_006
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- U(OMU)GA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8CKU|1|AA|G|2418, 8CKU|1|AA|A|2799, 8CKU|1|AA|G|2800, 8CKU|1|AA|A|2801, 8CKU|1|AA|A|2802
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8CKU_006 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.0882
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CKU|1|AA|U|2416
8CKU|1|AA|OMU|2417
8CKU|1|AA|G|2418
8CKU|1|AA|A|2419
*
8CKU|1|AA|U|2611
8CKU|1|AA|U|2612
8CKU|1|AA|U|2613
8CKU|1|AA|G|2614
*
8CKU|1|AA|C|2627
8CKU|1|AA|A|2628
*
8CKU|1|AA|U|2650
8CKU|1|AA|G|2651
*
8CKU|1|AA|C|2798
8CKU|1|AA|A|2799
8CKU|1|AA|G|2800
8CKU|1|AA|A|2801
8CKU|1|AA|A|2802
8CKU|1|AA|A|2803
8CKU|1|AA|A|2804
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L18-A
- Chain Cc
- Transfer RNA; tRNA
- Chain EE
- 60S ribosomal protein L2-A
- Chain F
- 60S ribosomal protein L21-A
- Chain M
- 60S ribosomal protein L28
- Chain QQ
- 60S ribosomal protein L15-A
- Chain a
- 60S ribosomal protein L42-A
Coloring options: