J5_8CVJ_010

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8CVJ|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8CVJ_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0787

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8CVJ|1|2A|C|47
8CVJ|1|2A|G|48
8CVJ|1|2A|A|49
8CVJ|1|2A|U|50
8CVJ|1|2A|G|51
8CVJ|1|2A|A|52
8CVJ|1|2A|A|53
8CVJ|1|2A|G|54
*
8CVJ|1|2A|C|116
8CVJ|1|2A|G|117
8CVJ|1|2A|A|118
8CVJ|1|2A|A|119
8CVJ|1|2A|U|120
8CVJ|1|2A|G|121
*
8CVJ|1|2A|C|130
8CVJ|1|2A|G|131
*
8CVJ|1|2A|C|148
8CVJ|1|2A|A|149
8CVJ|1|2A|C|150
*
8CVJ|1|2A|G|176
8CVJ|1|2A|G|177
8CVJ|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23