3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
CAG*CGUGC*GAG*CA*UG
Length
15 nucleotides
Bulged bases
8CVK|1|2A|A|532, 8CVK|1|2A|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8CVK_012 not in the Motif Atlas
Homologous match to J5_9DFE_003
Geometric discrepancy: 0.0809
The information below is about J5_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

8CVK|1|2A|C|531
8CVK|1|2A|A|532
8CVK|1|2A|G|533
*
8CVK|1|2A|C|560
8CVK|1|2A|G|561
8CVK|1|2A|U|562
8CVK|1|2A|G|563
8CVK|1|2A|C|564
*
8CVK|1|2A|G|577
8CVK|1|2A|A|578
8CVK|1|2A|G|579
*
8CVK|1|2A|C|1261
8CVK|1|2A|A|1262
*
8CVK|1|2A|U|2017
8CVK|1|2A|G|2018

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 25
50S ribosomal protein L32
Chain 2F
50S ribosomal protein L4
Chain 2U
50S ribosomal protein L20
Chain 2V
50S ribosomal protein L21
Chain 2W
50S ribosomal protein L22

Coloring options:


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