J5_8CVL_001

3D structure

PDB id

8CVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8CVL|1|1A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8CVL_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0528

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8CVL|1|1A|C|47
8CVL|1|1A|G|48
8CVL|1|1A|A|49
8CVL|1|1A|U|50
8CVL|1|1A|G|51
8CVL|1|1A|A|52
8CVL|1|1A|A|53
8CVL|1|1A|G|54
*
8CVL|1|1A|C|116
8CVL|1|1A|G|117
8CVL|1|1A|A|118
8CVL|1|1A|A|119
8CVL|1|1A|U|120
8CVL|1|1A|G|121
*
8CVL|1|1A|C|130
8CVL|1|1A|G|131
*
8CVL|1|1A|C|148
8CVL|1|1A|A|149
8CVL|1|1A|C|150
*
8CVL|1|1A|G|176
8CVL|1|1A|G|177
8CVL|1|1A|G|178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23