J5_8E35_003

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

8E35|1|I|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8E35_003 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.1091

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8E35|1|I|C|584
8E35|1|I|G|585
8E35|1|I|A|586
8E35|1|I|C|587
8E35|1|I|U|588
8E35|1|I|U|589
*
8E35|1|I|A|668
8E35|1|I|G|669
8E35|1|I|A|670
8E35|1|I|C|671
*
8E35|1|I|G|809
8E35|1|I|U|810
8E35|1|I|U|811
8E35|1|I|C|812
*
8E35|1|I|G|1195
8E35|1|I|C|1196
*
8E35|1|I|G|1250
8E35|1|I|C|1251
8E35|1|I|G|1252
8E35|1|I|A|1253
8E35|1|I|A|1254
8E35|1|I|U|1255
8E35|1|I|G|1256

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4