J5_8E3M_003
3D structure
- PDB id
- 8E3M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to L-linker solithromycin conjugate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.25 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 8E3M|1|I|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8E3M_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.037
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8E3M|1|I|C|584
8E3M|1|I|G|585
8E3M|1|I|A|586
8E3M|1|I|C|587
8E3M|1|I|U|588
8E3M|1|I|U|589
*
8E3M|1|I|A|668
8E3M|1|I|G|669
8E3M|1|I|A|670
8E3M|1|I|C|671
*
8E3M|1|I|G|809
8E3M|1|I|U|810
8E3M|1|I|U|811
8E3M|1|I|C|812
*
8E3M|1|I|G|1195
8E3M|1|I|C|1196
*
8E3M|1|I|G|1250
8E3M|1|I|C|1251
8E3M|1|I|G|1252
8E3M|1|I|A|1253
8E3M|1|I|A|1254
8E3M|1|I|U|1255
8E3M|1|I|G|1256
Current chains
- Chain I
- 50S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L4
Coloring options: