J5_8E3O_003

3D structure

PDB id

8E3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to solithromycin and VM1

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

8E3O|1|I|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8E3O_003 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.0557

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8E3O|1|I|C|584
8E3O|1|I|G|585
8E3O|1|I|A|586
8E3O|1|I|C|587
8E3O|1|I|U|588
8E3O|1|I|U|589
*
8E3O|1|I|A|668
8E3O|1|I|G|669
8E3O|1|I|A|670
8E3O|1|I|C|671
*
8E3O|1|I|G|809
8E3O|1|I|U|810
8E3O|1|I|U|811
8E3O|1|I|C|812
*
8E3O|1|I|G|1195
8E3O|1|I|C|1196
*
8E3O|1|I|G|1250
8E3O|1|I|C|1251
8E3O|1|I|G|1252
8E3O|1|I|A|1253
8E3O|1|I|A|1254
8E3O|1|I|U|1255
8E3O|1|I|G|1256

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4