J5_8E43_003

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

8E43|1|I|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8E43_003 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.059

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8E43|1|I|C|584
8E43|1|I|G|585
8E43|1|I|A|586
8E43|1|I|C|587
8E43|1|I|U|588
8E43|1|I|U|589
*
8E43|1|I|A|668
8E43|1|I|G|669
8E43|1|I|A|670
8E43|1|I|C|671
*
8E43|1|I|G|809
8E43|1|I|U|810
8E43|1|I|U|811
8E43|1|I|C|812
*
8E43|1|I|G|1195
8E43|1|I|C|1196
*
8E43|1|I|G|1250
8E43|1|I|C|1251
8E43|1|I|G|1252
8E43|1|I|A|1253
8E43|1|I|A|1254
8E43|1|I|U|1255
8E43|1|I|G|1256

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4