J5_8E43_006

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

8E43|1|I|U|2076, 8E43|1|I|G|2428, 8E43|1|I|G|2429, 8E43|1|I|A|2430, 8E43|1|I|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8E43_006 not in the Motif Atlas

Homologous match to J5_4WF9_007

Geometric discrepancy: 0.0728

The information below is about J5_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8E43|1|I|U|2074
8E43|1|I|U|2075
8E43|1|I|U|2076
8E43|1|I|A|2077
*
8E43|1|I|U|2243
8E43|1|I|U|2244
8E43|1|I|U|2245
8E43|1|I|G|2246
*
8E43|1|I|C|2258
8E43|1|I|U|2259
*
8E43|1|I|A|2281
8E43|1|I|G|2282
*
8E43|1|I|C|2427
8E43|1|I|G|2428
8E43|1|I|G|2429
8E43|1|I|A|2430
8E43|1|I|U|2431
8E43|1|I|A|2432
8E43|1|I|A|2433
8E43|1|I|A|2434
8E43|1|I|A|2435

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain L

50S ribosomal protein L15