J5_8E47_003

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

8E47|1|I|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8E47_003 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.114

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8E47|1|I|C|584
8E47|1|I|G|585
8E47|1|I|A|586
8E47|1|I|C|587
8E47|1|I|U|588
8E47|1|I|U|589
*
8E47|1|I|A|668
8E47|1|I|G|669
8E47|1|I|A|670
8E47|1|I|C|671
*
8E47|1|I|G|809
8E47|1|I|U|810
8E47|1|I|U|811
8E47|1|I|C|812
*
8E47|1|I|G|1195
8E47|1|I|C|1196
*
8E47|1|I|G|1250
8E47|1|I|C|1251
8E47|1|I|G|1252
8E47|1|I|A|1253
8E47|1|I|A|1254
8E47|1|I|U|1255
8E47|1|I|G|1256

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4