3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
UUUA*UUUG*CU*AG*CGGAUAAAA
Length
21 nucleotides
Bulged bases
8EMM|1|a|U|2076, 8EMM|1|a|G|2428, 8EMM|1|a|G|2429, 8EMM|1|a|A|2430, 8EMM|1|a|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8EMM_009 not in the Motif Atlas
Homologous match to J5_4WF9_007
Geometric discrepancy: 0.0695
The information below is about J5_4WF9_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_39529.2
Basepair signature
cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

8EMM|1|a|U|2074
8EMM|1|a|U|2075
8EMM|1|a|U|2076
8EMM|1|a|A|2077
*
8EMM|1|a|U|2243
8EMM|1|a|U|2244
8EMM|1|a|U|2245
8EMM|1|a|G|2246
*
8EMM|1|a|C|2258
8EMM|1|a|U|2259
*
8EMM|1|a|A|2281
8EMM|1|a|G|2282
*
8EMM|1|a|C|2427
8EMM|1|a|G|2428
8EMM|1|a|G|2429
8EMM|1|a|A|2430
8EMM|1|a|U|2431
8EMM|1|a|A|2432
8EMM|1|a|A|2433
8EMM|1|a|A|2434
8EMM|1|a|A|2435

Current chains

Chain a
23S rRNA

Nearby chains

Chain 0
50S ribosomal protein L33
Chain 2
50S ribosomal protein L35
Chain c
50S ribosomal protein L2
Chain k
50S ribosomal protein L15
Chain v
50S ribosomal protein L27
Chain w
50S ribosomal protein L28

Coloring options:


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