J5_8ETI_001
3D structure
- PDB id
- 8ETI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fkbp39 associated 60S nascent ribosome State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8ETI|1|2|U|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8ETI_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.0932
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8ETI|1|1|A|20
8ETI|1|1|G|21
8ETI|1|1|G|22
*
8ETI|1|2|C|43
8ETI|1|2|G|44
8ETI|1|2|A|45
8ETI|1|2|U|46
8ETI|1|2|G|47
8ETI|1|2|A|48
8ETI|1|2|A|49
8ETI|1|2|G|50
*
8ETI|1|2|U|110
8ETI|1|2|G|111
8ETI|1|2|A|112
8ETI|1|2|A|113
8ETI|1|2|C|114
8ETI|1|2|G|115
*
8ETI|1|2|C|123
8ETI|1|2|G|124
*
8ETI|1|2|C|145
8ETI|1|2|A|146
8ETI|1|2|U|147
Current chains
- Chain 1
- RNA (1564-MER)
- Chain 2
- RNA (152-MER)
Nearby chains
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25-A
- Chain h
- 60S ribosomal protein L35
- Chain j
- 60S ribosomal protein L37-B
- Chain v
- Nucleolar protein 16
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