J5_8ETI_002
3D structure
- PDB id
- 8ETI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fkbp39 associated 60S nascent ribosome State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8ETI|1|1|U|1470
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8ETI_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0955
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ETI|1|1|G|683
8ETI|1|1|G|684
8ETI|1|1|A|685
8ETI|1|1|G|686
8ETI|1|1|U|687
8ETI|1|1|C|688
*
8ETI|1|1|G|831
8ETI|1|1|G|832
8ETI|1|1|A|833
8ETI|1|1|C|834
*
8ETI|1|1|G|973
8ETI|1|1|U|974
8ETI|1|1|U|975
8ETI|1|1|C|976
*
8ETI|1|1|G|1409
8ETI|1|1|C|1410
*
8ETI|1|1|G|1465
8ETI|1|1|C|1466
8ETI|1|1|A|1467
8ETI|1|1|G|1468
8ETI|1|1|A|1469
8ETI|1|1|U|1470
8ETI|1|1|C|1471
Current chains
- Chain 1
- RNA (1564-MER)
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 3
- Protein mak16
- Chain C
- 60S ribosomal protein L4-B
- Chain N
- 60S ribosomal protein L15-A
- Chain e
- 60S ribosomal protein L32-A
Coloring options: