J5_8EV6_010

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8EV6|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8EV6_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0658

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8EV6|1|2A|C|47
8EV6|1|2A|G|48
8EV6|1|2A|A|49
8EV6|1|2A|U|50
8EV6|1|2A|G|51
8EV6|1|2A|A|52
8EV6|1|2A|A|53
8EV6|1|2A|G|54
*
8EV6|1|2A|C|116
8EV6|1|2A|G|117
8EV6|1|2A|A|118
8EV6|1|2A|A|119
8EV6|1|2A|U|120
8EV6|1|2A|G|121
*
8EV6|1|2A|C|130
8EV6|1|2A|G|131
*
8EV6|1|2A|C|148
8EV6|1|2A|A|149
8EV6|1|2A|C|150
*
8EV6|1|2A|G|176
8EV6|1|2A|G|177
8EV6|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23