J5_8EVP_001
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8EVP|1|A4|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8EVP_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.0499
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8EVP|1|A1|A|20
8EVP|1|A1|G|21
8EVP|1|A1|G|22
*
8EVP|1|A4|C|35
8EVP|1|A4|G|36
8EVP|1|A4|A|37
8EVP|1|A4|U|38
8EVP|1|A4|G|39
8EVP|1|A4|A|40
8EVP|1|A4|A|41
8EVP|1|A4|G|42
*
8EVP|1|A4|U|102
8EVP|1|A4|G|103
8EVP|1|A4|A|104
8EVP|1|A4|A|105
8EVP|1|A4|C|106
8EVP|1|A4|G|107
*
8EVP|1|A4|C|115
8EVP|1|A4|G|116
*
8EVP|1|A4|C|137
8EVP|1|A4|A|138
8EVP|1|A4|U|139
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8 S rRNA
Nearby chains
- Chain AN
- 60S ribosomal protein L15-A
- Chain AX
- 60S ribosomal protein L25
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
Coloring options: