J5_8EVP_004
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8EVP|1|A1|G|2116, 8EVP|1|A1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8EVP_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0712
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8EVP|1|A1|G|1906
8EVP|1|A1|C|1907
8EVP|1|A1|A|1908
8EVP|1|A1|A|1909
8EVP|1|A1|A|1910
8EVP|1|A1|A|1911
8EVP|1|A1|U|1912
8EVP|1|A1|A|1913
8EVP|1|A1|G|1914
*
8EVP|1|A1|U|1938
8EVP|1|A1|G|1939
*
8EVP|1|A1|U|2109
8EVP|1|A1|G|2110
*
8EVP|1|A1|C|2114
8EVP|1|A1|G|2115
8EVP|1|A1|G|2116
8EVP|1|A1|A|2117
8EVP|1|A1|C|2118
8EVP|1|A1|A|2119
8EVP|1|A1|A|2120
8EVP|1|A1|G|2121
8EVP|1|A1|G|2122
*
8EVP|1|A1|C|2331
8EVP|1|A1|A|2332
8EVP|1|A1|C|2333
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AR
- 60S ribosomal protein L19-A
- Chain AV
- 60S ribosomal protein L23-A
- Chain AW
- RPL24A isoform 1
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: