J5_8EYT_003

3D structure

PDB id

8EYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA+KsgA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8EYT|1|A|A|109, 8EYT|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8EYT_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0988

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8EYT|1|A|C|58
8EYT|1|A|A|59
8EYT|1|A|A|60
8EYT|1|A|G|61
*
8EYT|1|A|C|106
8EYT|1|A|G|107
8EYT|1|A|G|108
8EYT|1|A|A|109
8EYT|1|A|C|110
8EYT|1|A|G|111
8EYT|1|A|G|112
8EYT|1|A|G|113
*
8EYT|1|A|C|314
8EYT|1|A|A|315
8EYT|1|A|C|316
*
8EYT|1|A|G|337
8EYT|1|A|A|338
8EYT|1|A|C|339
*
8EYT|1|A|G|350
8EYT|1|A|G|351
8EYT|1|A|C|352
8EYT|1|A|A|353
8EYT|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20