J5_8FC1_010

3D structure

PDB id

8FC1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8FC1|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8FC1_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0404

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8FC1|1|2A|C|47
8FC1|1|2A|G|48
8FC1|1|2A|A|49
8FC1|1|2A|U|50
8FC1|1|2A|G|51
8FC1|1|2A|A|52
8FC1|1|2A|A|53
8FC1|1|2A|G|54
*
8FC1|1|2A|C|116
8FC1|1|2A|G|117
8FC1|1|2A|A|118
8FC1|1|2A|A|119
8FC1|1|2A|U|120
8FC1|1|2A|G|121
*
8FC1|1|2A|C|130
8FC1|1|2A|G|131
*
8FC1|1|2A|C|148
8FC1|1|2A|A|149
8FC1|1|2A|C|150
*
8FC1|1|2A|G|176
8FC1|1|2A|G|177
8FC1|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23