3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)
Length
24 nucleotides
Bulged bases
8FL9|1|L3|C|2289, 8FL9|1|L3|U|2350
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8FL9_002 not in the Motif Atlas
Homologous match to J5_8C3A_002
Geometric discrepancy: 0.0841
The information below is about J5_8C3A_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8FL9|1|L3|G|1335
8FL9|1|L3|G|1336
8FL9|1|L3|A|1337
8FL9|1|L3|G|1338
8FL9|1|L3|U|1339
8FL9|1|L3|OMC|1340
*
8FL9|1|L3|G|1516
8FL9|1|L3|G|1517
8FL9|1|L3|A|1518
8FL9|1|L3|C|1519
*
8FL9|1|L3|G|1658
8FL9|1|L3|U|1659
8FL9|1|L3|U|1660
8FL9|1|L3|C|1661
*
8FL9|1|L3|G|2288
8FL9|1|L3|C|2289
8FL9|1|L3|C|2290
*
8FL9|1|L3|G|2345
8FL9|1|L3|C|2346
8FL9|1|L3|A|2347
8FL9|1|L3|G|2348
8FL9|1|L3|A|2349
8FL9|1|L3|U|2350
8FL9|1|L3|OMC|2351

Current chains

Chain L3
28S rRNA

Nearby chains

Chain L1
5.8S ribosomal RNA; 5.8S rRNA
Chain L6
60S ribosomal protein L13
Chain L9
60S ribosomal protein L15
Chain LK
60S ribosomal protein L27a
Chain LL
60S ribosomal protein L28
Chain LQ
60S ribosomal protein L32
Chain SA
60S ribosomal protein L4
Chain SR
GTP-binding protein 4

Coloring options:


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