J5_8FR8_011
3D structure
- PDB id
- 8FR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- CAAG*CGAACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8FR8|1|a|A|105, 8FR8|1|a|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8FR8_011 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0993
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.2
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8FR8|1|a|C|62
8FR8|1|a|A|63
8FR8|1|a|A|64
8FR8|1|a|G|65
*
8FR8|1|a|C|102
8FR8|1|a|G|103
8FR8|1|a|A|104
8FR8|1|a|A|105
8FR8|1|a|C|106
8FR8|1|a|G|107
8FR8|1|a|G|108
8FR8|1|a|G|109
*
8FR8|1|a|C|314
8FR8|1|a|A|315
8FR8|1|a|C|316
*
8FR8|1|a|G|337
8FR8|1|a|A|338
8FR8|1|a|C|339
*
8FR8|1|a|G|350
8FR8|1|a|G|351
8FR8|1|a|C|352
8FR8|1|a|A|353
8FR8|1|a|G|354
Current chains
- Chain a
- 16S rRNA (1511-MER)
Nearby chains
- Chain C
- 50S ribosomal protein L19
- Chain U
- 50S ribosomal protein L14
- Chain q
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
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