3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
8FZF|1|A|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8FZF_003 not in the Motif Atlas
Homologous match to J5_5J7L_015
Geometric discrepancy: 0.0905
The information below is about J5_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

8FZF|1|A|C|584
8FZF|1|A|G|585
8FZF|1|A|A|586
8FZF|1|A|C|587
8FZF|1|A|U|588
8FZF|1|A|U|589
*
8FZF|1|A|A|668
8FZF|1|A|G|669
8FZF|1|A|A|670
8FZF|1|A|C|671
*
8FZF|1|A|G|809
8FZF|1|A|U|810
8FZF|1|A|U|811
8FZF|1|A|C|812
*
8FZF|1|A|G|1195
8FZF|1|A|C|1196
*
8FZF|1|A|G|1250
8FZF|1|A|C|1251
8FZF|1|A|G|1252
8FZF|1|A|A|1253
8FZF|1|A|A|1254
8FZF|1|A|U|1255
8FZF|1|A|G|1256

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 7
50S ribosomal protein L35
Chain E
50S ribosomal protein L4
Chain N
50S ribosomal protein L15
Chain S
50S ribosomal protein L20
Chain T
Ribosomal protein L21

Coloring options:


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