3D structure

PDB id
8FZI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
8FZI|1|A|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8FZI_003 not in the Motif Atlas
Homologous match to J5_5J7L_015
Geometric discrepancy: 0.076
The information below is about J5_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

8FZI|1|A|C|584
8FZI|1|A|G|585
8FZI|1|A|A|586
8FZI|1|A|C|587
8FZI|1|A|U|588
8FZI|1|A|U|589
*
8FZI|1|A|A|668
8FZI|1|A|G|669
8FZI|1|A|A|670
8FZI|1|A|C|671
*
8FZI|1|A|G|809
8FZI|1|A|U|810
8FZI|1|A|U|811
8FZI|1|A|C|812
*
8FZI|1|A|G|1195
8FZI|1|A|C|1196
*
8FZI|1|A|G|1250
8FZI|1|A|C|1251
8FZI|1|A|G|1252
8FZI|1|A|A|1253
8FZI|1|A|A|1254
8FZI|1|A|U|1255
8FZI|1|A|G|1256

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 7
50S ribosomal protein L35
Chain E
50S ribosomal protein L4
Chain N
50S ribosomal protein L15
Chain S
50S ribosomal protein L20
Chain T
Ribosomal protein L21

Coloring options:


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