J5_8FZJ_009

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8FZJ|1|a|A|109, 8FZJ|1|a|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8FZJ_009 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1099

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8FZJ|1|a|C|58
8FZJ|1|a|A|59
8FZJ|1|a|A|60
8FZJ|1|a|G|61
*
8FZJ|1|a|C|106
8FZJ|1|a|G|107
8FZJ|1|a|G|108
8FZJ|1|a|A|109
8FZJ|1|a|C|110
8FZJ|1|a|G|111
8FZJ|1|a|G|112
8FZJ|1|a|G|113
*
8FZJ|1|a|C|314
8FZJ|1|a|A|315
8FZJ|1|a|C|316
*
8FZJ|1|a|G|337
8FZJ|1|a|A|338
8FZJ|1|a|C|339
*
8FZJ|1|a|G|350
8FZJ|1|a|G|351
8FZJ|1|a|C|352
8FZJ|1|a|A|353
8FZJ|1|a|G|354

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L14

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20