J5_8HFR_003
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 8HFR|1|1e|U|719, 8HFR|1|1e|A|784, 8HFR|1|1e|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8HFR_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0736
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8HFR|1|1e|C|675
8HFR|1|1e|G|676
8HFR|1|1e|A|677
8HFR|1|1e|G|678
*
8HFR|1|1e|C|702
8HFR|1|1e|G|703
8HFR|1|1e|U|704
8HFR|1|1e|A|705
8HFR|1|1e|A|706
*
8HFR|1|1e|U|713
8HFR|1|1e|G|714
8HFR|1|1e|A|715
8HFR|1|1e|A|716
8HFR|1|1e|C|717
8HFR|1|1e|G|718
8HFR|1|1e|U|719
8HFR|1|1e|A|720
8HFR|1|1e|G|721
*
8HFR|1|1e|C|749
8HFR|1|1e|G|750
8HFR|1|1e|A|751
*
8HFR|1|1e|U|782
8HFR|1|1e|A|783
8HFR|1|1e|A|784
8HFR|1|1e|G|785
8HFR|1|1e|A|786
8HFR|1|1e|G|787
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain DO
- 60S ribosomal protein L4-A
- Chain LL
- 60S ribosomal protein L13-A
- Chain Qk
- 60S ribosomal protein L18-A
- Chain aw
- 60S ribosomal protein L28
- Chain b3
- 60S ribosomal protein L29
- Chain ia
- 60S ribosomal protein L36-A
Coloring options: