J5_8HFR_004
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8HFR|1|1e|G|2116, 8HFR|1|1e|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8HFR_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.1037
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8HFR|1|1e|G|1906
8HFR|1|1e|C|1907
8HFR|1|1e|A|1908
8HFR|1|1e|A|1909
8HFR|1|1e|A|1910
8HFR|1|1e|A|1911
8HFR|1|1e|U|1912
8HFR|1|1e|A|1913
8HFR|1|1e|G|1914
*
8HFR|1|1e|U|1938
8HFR|1|1e|G|1939
*
8HFR|1|1e|U|2109
8HFR|1|1e|G|2110
*
8HFR|1|1e|C|2114
8HFR|1|1e|G|2115
8HFR|1|1e|G|2116
8HFR|1|1e|A|2117
8HFR|1|1e|C|2118
8HFR|1|1e|A|2119
8HFR|1|1e|A|2120
8HFR|1|1e|G|2121
8HFR|1|1e|G|2122
*
8HFR|1|1e|C|2331
8HFR|1|1e|A|2332
8HFR|1|1e|C|2333
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L3
- Chain RP
- 60S ribosomal protein L19-A
- Chain V5
- 60S ribosomal protein L23-A
- Chain ox
- Bud site selection protein 20
- Chain tB
- Ribosome biogenesis protein RLP24
- Chain v9
- Nucleolar GTP-binding protein 2
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