J5_8HL2_005

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAG*CAUAG*CAAGU*AG*UGAAG

Length

21 nucleotides

Bulged bases

8HL2|1|A23S|A|787

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8HL2_005 not in the Motif Atlas

Homologous match to J5_4V9F_004

Geometric discrepancy: 0.2682

The information below is about J5_4V9F_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43592.1

Basepair signature

cWW-F-F-F-F-cWW-cWW-F-cWW-F-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8HL2|1|A23S|C|697
8HL2|1|A23S|G|698
8HL2|1|A23S|A|699
8HL2|1|A23S|G|700
*
8HL2|1|A23S|C|724
8HL2|1|A23S|A|725
8HL2|1|A23S|U|726
8HL2|1|A23S|A|727
8HL2|1|A23S|G|728
*
8HL2|1|A23S|C|735
8HL2|1|A23S|A|736
8HL2|1|A23S|A|737
8HL2|1|A23S|G|738
8HL2|1|A23S|U|739
*
8HL2|1|A23S|A|769
8HL2|1|A23S|G|770
*
8HL2|1|A23S|U|785
8HL2|1|A23S|G|786
8HL2|1|A23S|A|787
8HL2|1|A23S|A|788
8HL2|1|A23S|G|789

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4

Chain L15P

50S ribosomal protein L15

Chain L18E

50S ribosomal protein L18e