J5_8HL2_008
3D structure
- PDB id
- 8HL2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UUCA*UUCG*CU*AG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8HL2|1|A23S|C|2205, 8HL2|1|A23S|A|2554, 8HL2|1|A23S|G|2555, 8HL2|1|A23S|A|2556, 8HL2|1|A23S|A|2557
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8HL2_008 not in the Motif Atlas
- Homologous match to J5_4V9F_008
- Geometric discrepancy: 0.2727
- The information below is about J5_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.2
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8HL2|1|A23S|U|2203
8HL2|1|A23S|U|2204
8HL2|1|A23S|C|2205
8HL2|1|A23S|A|2206
*
8HL2|1|A23S|U|2364
8HL2|1|A23S|U|2365
8HL2|1|A23S|C|2366
8HL2|1|A23S|G|2367
*
8HL2|1|A23S|C|2380
8HL2|1|A23S|U|2381
*
8HL2|1|A23S|A|2403
8HL2|1|A23S|G|2404
*
8HL2|1|A23S|C|2553
8HL2|1|A23S|A|2554
8HL2|1|A23S|G|2555
8HL2|1|A23S|A|2556
8HL2|1|A23S|A|2557
8HL2|1|A23S|A|2558
8HL2|1|A23S|A|2559
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain AETN
- Transfer RNA; tRNA
- Chain AL2P
- 50S ribosomal protein L2
- Chain L15E
- 50S ribosomal protein L15e
- Chain L15P
- 50S ribosomal protein L15
- Chain L21E
- 50S ribosomal protein L21e
- Chain L44E
- 50S ribosomal protein L44e
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