J5_8HL4_004

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GGAGUU*AGGC*GUUC*GC*GCAGAUC

Length

23 nucleotides

Bulged bases

8HL4|1|A23S|U|1398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8HL4_004 not in the Motif Atlas

Homologous match to J5_4V9F_003

Geometric discrepancy: 0.1925

The information below is about J5_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_15067.1

Basepair signature

cWW-tSH-tSS-tHH-F-F-F-tWS-cWW-cWW-F-cWW-cWW-F-F

Number of instances in this motif group

2

Unit IDs

8HL4|1|A23S|G|680
8HL4|1|A23S|G|681
8HL4|1|A23S|A|682
8HL4|1|A23S|G|683
8HL4|1|A23S|U|684
8HL4|1|A23S|U|685
*
8HL4|1|A23S|A|801
8HL4|1|A23S|G|802
8HL4|1|A23S|G|803
8HL4|1|A23S|C|804
*
8HL4|1|A23S|G|945
8HL4|1|A23S|U|946
8HL4|1|A23S|U|947
8HL4|1|A23S|C|948
*
8HL4|1|A23S|G|1339
8HL4|1|A23S|C|1340
*
8HL4|1|A23S|G|1393
8HL4|1|A23S|C|1394
8HL4|1|A23S|A|1395
8HL4|1|A23S|G|1396
8HL4|1|A23S|A|1397
8HL4|1|A23S|U|1398
8HL4|1|A23S|C|1399

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4

Chain L32E

50S ribosomal protein L32e