J5_8HL4_006
3D structure
- PDB id
- 8HL4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.62 Å
Loop
- Sequence
- GCAAAUUAG*UG*UC*GUGACCAGA*UAC
- Length
- 25 nucleotides
- Bulged bases
- 8HL4|1|A23S|G|1902, 8HL4|1|A23S|G|1907
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8HL4_006 not in the Motif Atlas
- Homologous match to J5_4V9F_006
- Geometric discrepancy: 0.1582
- The information below is about J5_4V9F_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
8HL4|1|A23S|G|1831
8HL4|1|A23S|C|1832
8HL4|1|A23S|A|1833
8HL4|1|A23S|A|1834
8HL4|1|A23S|A|1835
8HL4|1|A23S|U|1836
8HL4|1|A23S|U|1837
8HL4|1|A23S|A|1838
8HL4|1|A23S|G|1839
*
8HL4|1|A23S|U|1863
8HL4|1|A23S|G|1864
*
8HL4|1|A23S|U|1895
8HL4|1|A23S|C|1896
*
8HL4|1|A23S|G|1900
8HL4|1|A23S|U|1901
8HL4|1|A23S|G|1902
8HL4|1|A23S|A|1903
8HL4|1|A23S|C|1904
8HL4|1|A23S|C|1905
8HL4|1|A23S|A|1906
8HL4|1|A23S|G|1907
8HL4|1|A23S|A|1908
*
8HL4|1|A23S|U|2117
8HL4|1|A23S|A|2118
8HL4|1|A23S|C|2119
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain A16S
- Small subunit ribosomal RNA; SSU rRNA
- Chain AL3P
- 50S ribosomal protein L3
- Chain L14P
- 50S ribosomal protein L14
- Chain L19E
- 50S ribosomal protein L19e
- Chain L24E
- 50S ribosomal protein L24e
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