J5_8HSP_006

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

8HSP|1|a|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8HSP_006 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.0367

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8HSP|1|a|C|584
8HSP|1|a|G|585
8HSP|1|a|A|586
8HSP|1|a|C|587
8HSP|1|a|U|588
8HSP|1|a|U|589
*
8HSP|1|a|A|668
8HSP|1|a|G|669
8HSP|1|a|A|670
8HSP|1|a|C|671
*
8HSP|1|a|G|809
8HSP|1|a|U|810
8HSP|1|a|U|811
8HSP|1|a|C|812
*
8HSP|1|a|G|1195
8HSP|1|a|C|1196
*
8HSP|1|a|G|1250
8HSP|1|a|C|1251
8HSP|1|a|G|1252
8HSP|1|a|A|1253
8HSP|1|a|A|1254
8HSP|1|a|U|1255
8HSP|1|a|G|1256

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15

Chain p

50S ribosomal protein L20

Chain q

50S ribosomal protein L21