J5_8I9P_001
3D structure
- PDB id
- 8I9P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8I9P|1|C2|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8I9P_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1015
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8I9P|1|C1|A|20
8I9P|1|C1|G|21
8I9P|1|C1|G|22
*
8I9P|1|C2|C|35
8I9P|1|C2|G|36
8I9P|1|C2|A|37
8I9P|1|C2|U|38
8I9P|1|C2|G|39
8I9P|1|C2|A|40
8I9P|1|C2|A|41
8I9P|1|C2|G|42
*
8I9P|1|C2|U|102
8I9P|1|C2|G|103
8I9P|1|C2|A|104
8I9P|1|C2|A|105
8I9P|1|C2|C|106
8I9P|1|C2|G|107
*
8I9P|1|C2|C|115
8I9P|1|C2|G|116
*
8I9P|1|C2|C|137
8I9P|1|C2|A|138
8I9P|1|C2|U|139
Current chains
- Chain C1
- RNA (3341-MER)
- Chain C2
- RNA (306-MER)
Nearby chains
- Chain CJ
- Pescadillo homolog
- Chain CR
- Nucleolar protein 16
- Chain LN
- Ribosomal protein L15
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Lj
- Ribosomal protein L37
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