J5_8IFC_009
3D structure
- PDB id
- 8IFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-bound E.coli 70S ribosome in the PURE system
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 8IFC|1|a|U|2076, 8IFC|1|a|G|2428, 8IFC|1|a|G|2429, 8IFC|1|a|A|2430, 8IFC|1|a|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8IFC_009 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0708
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8IFC|1|a|U|2074
8IFC|1|a|U|2075
8IFC|1|a|U|2076
8IFC|1|a|A|2077
*
8IFC|1|a|U|2243
8IFC|1|a|U|2244
8IFC|1|a|U|2245
8IFC|1|a|G|2246
*
8IFC|1|a|C|2258
8IFC|1|a|U|2259
*
8IFC|1|a|A|2281
8IFC|1|a|G|2282
*
8IFC|1|a|C|2427
8IFC|1|a|G|2428
8IFC|1|a|G|2429
8IFC|1|a|A|2430
8IFC|1|a|U|2431
8IFC|1|a|A|2432
8IFC|1|a|A|2433
8IFC|1|a|A|2434
8IFC|1|a|A|2435
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain 2
- 50S ribosomal protein L35
- Chain c
- 50S ribosomal protein L2
- Chain k
- 50S ribosomal protein L15
- Chain v
- 50S ribosomal protein L27
- Chain w
- 50S ribosomal protein L28
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