J5_8IFD_006
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 8IFD|1|2m|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8IFD_006 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1735
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8IFD|1|2m|C|30
8IFD|1|2m|U|31
8IFD|1|2m|U|32
8IFD|1|2m|G|33
8IFD|1|2m|U|34
*
8IFD|1|2m|A|521
8IFD|1|2m|A|522
8IFD|1|2m|A|523
8IFD|1|2m|U|524
8IFD|1|2m|A|525
8IFD|1|2m|A|526
8IFD|1|2m|C|527
*
8IFD|1|2m|G|558
8IFD|1|2m|G|559
8IFD|1|2m|A|560
8IFD|1|2m|A|561
8IFD|1|2m|U|562
8IFD|1|2m|G|563
*
8IFD|1|2m|C|592
8IFD|1|2m|C|593
8IFD|1|2m|A|594
8IFD|1|2m|U|595
*
8IFD|1|2m|A|641
8IFD|1|2m|U|642
8IFD|1|2m|A|643
8IFD|1|2m|G|644
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 3B
- 40S ribosomal protein S23
- Chain 3I
- 40S ribosomal protein S9
- Chain 3Q
- 40S ribosomal protein S30
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