J5_8IFE_006

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

8IFE|1|2m|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8IFE_006 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1744

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8IFE|1|2m|C|30
8IFE|1|2m|U|31
8IFE|1|2m|U|32
8IFE|1|2m|G|33
8IFE|1|2m|U|34
*
8IFE|1|2m|A|521
8IFE|1|2m|A|522
8IFE|1|2m|A|523
8IFE|1|2m|U|524
8IFE|1|2m|A|525
8IFE|1|2m|A|526
8IFE|1|2m|C|527
*
8IFE|1|2m|G|558
8IFE|1|2m|G|559
8IFE|1|2m|A|560
8IFE|1|2m|A|561
8IFE|1|2m|U|562
8IFE|1|2m|G|563
*
8IFE|1|2m|C|592
8IFE|1|2m|C|593
8IFE|1|2m|A|594
8IFE|1|2m|U|595
*
8IFE|1|2m|A|641
8IFE|1|2m|U|642
8IFE|1|2m|A|643
8IFE|1|2m|G|644

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3B

40S ribosomal protein S23

Chain 3I

40S ribosomal protein S9

Chain 3Q

40S ribosomal protein S30