J5_8IP8_008
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8IP8|1|aa|A|94, 8IP8|1|aa|C|428
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8IP8_008 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0902
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8IP8|1|aa|C|54
8IP8|1|aa|A|55
8IP8|1|aa|U|56
8IP8|1|aa|G|57
*
8IP8|1|aa|C|91
8IP8|1|aa|G|92
8IP8|1|aa|A|93
8IP8|1|aa|A|94
8IP8|1|aa|U|95
8IP8|1|aa|G|96
8IP8|1|aa|G|97
8IP8|1|aa|C|98
*
8IP8|1|aa|G|390
8IP8|1|aa|A|391
8IP8|1|aa|G|392
*
8IP8|1|aa|C|413
8IP8|1|aa|A|414
8IP8|1|aa|C|415
*
8IP8|1|aa|G|426
8IP8|1|aa|G|427
8IP8|1|aa|C|428
8IP8|1|aa|A|429
8IP8|1|aa|G|430
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain GA
- 60S ribosomal protein uL14
- Chain ba
- 40S ribosomal protein eS24
- Chain ca
- 40S ribosomal protein eS8
- Chain eb
- 40S ribosomal protein uS4
- Chain gb
- 40S ribosomal protein eS6
- Chain ja
- 40S ribosomal protein eS4
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