J5_8JDK_006
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)
- Length
- 26 nucleotides
- Bulged bases
- 8JDK|1|w|C|593
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8JDK_006 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1916
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8JDK|1|w|C|30
8JDK|1|w|U|31
8JDK|1|w|U|32
8JDK|1|w|G|33
8JDK|1|w|PSU|34
*
8JDK|1|w|A|521
8JDK|1|w|A|522
8JDK|1|w|A|523
8JDK|1|w|U|524
8JDK|1|w|A|525
8JDK|1|w|A|526
8JDK|1|w|C|527
*
8JDK|1|w|G|558
8JDK|1|w|G|559
8JDK|1|w|A|560
8JDK|1|w|A|561
8JDK|1|w|U|562
8JDK|1|w|G|563
*
8JDK|1|w|C|592
8JDK|1|w|C|593
8JDK|1|w|A|594
8JDK|1|w|U|595
*
8JDK|1|w|A|641
8JDK|1|w|U|642
8JDK|1|w|A|643
8JDK|1|w|OMG|644
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 6
- 40S ribosomal protein S9
- Chain AJ
- 40S ribosomal protein S23
- Chain AQ
- 40S ribosomal protein S30
Coloring options: