J5_8K2B_004
3D structure
- PDB id
- 8K2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 39S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUA*UUCG*CU*AG*CGGAACAA
- Length
- 20 nucleotides
- Bulged bases
- 8K2B|1|L1|U|1069, 8K2B|1|L1|G|1246, 8K2B|1|L1|G|1247, 8K2B|1|L1|A|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8K2B_004 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.3072
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8K2B|1|L1|U|1067
8K2B|1|L1|U|1068
8K2B|1|L1|U|1069
8K2B|1|L1|A|1070
*
8K2B|1|L1|U|1137
8K2B|1|L1|U|1138
8K2B|1|L1|C|1139
8K2B|1|L1|G|1140
*
8K2B|1|L1|C|1152
8K2B|1|L1|U|1153
*
8K2B|1|L1|A|1175
8K2B|1|L1|G|1176
*
8K2B|1|L1|C|1245
8K2B|1|L1|G|1246
8K2B|1|L1|G|1247
8K2B|1|L1|A|1248
8K2B|1|L1|A|1249
8K2B|1|L1|C|1250
8K2B|1|L1|A|1251
8K2B|1|L1|A|1252
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL2m
- Chain LO
- Large ribosomal subunit protein uL15m
- Chain La
- Large ribosomal subunit protein bL27m
- Chain Lb
- Large ribosomal subunit protein bL28m
- Chain Li
- Large ribosomal subunit protein bL35m
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