J5_8KIE_001

3D structure

PDB id

8KIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF with 50S ribosomal subunit (local map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8KIE|1|a|U|1879, 8KIE|1|a|G|1884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8KIE_001 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0672

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8KIE|1|a|G|1795
8KIE|1|a|C|1796
8KIE|1|a|A|1797
8KIE|1|a|A|1798
8KIE|1|a|A|1799
8KIE|1|a|A|1800
8KIE|1|a|U|1801
8KIE|1|a|G|1802
8KIE|1|a|G|1803
*
8KIE|1|a|C|1827
8KIE|1|a|G|1828
*
8KIE|1|a|U|1872
8KIE|1|a|C|1873
*
8KIE|1|a|G|1877
8KIE|1|a|A|1878
8KIE|1|a|U|1879
8KIE|1|a|A|1880
8KIE|1|a|C|1881
8KIE|1|a|C|1882
8KIE|1|a|A|1883
8KIE|1|a|G|1884
8KIE|1|a|C|1885
*
8KIE|1|a|G|2109
8KIE|1|a|G|2110
8KIE|1|a|C|2111

Current chains

Chain a

23S rRNA (partial)

Nearby chains

Chain y

Ribosome-binding ATPase YchF

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19