J5_8OIR_004
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUCG*CU*AG*CGGAACAA
- Length
- 20 nucleotides
- Bulged bases
- 8OIR|1|B8|U|1069, 8OIR|1|B8|G|1246, 8OIR|1|B8|G|1247, 8OIR|1|B8|A|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8OIR_004 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.3083
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8OIR|1|B8|U|1067
8OIR|1|B8|U|1068
8OIR|1|B8|U|1069
8OIR|1|B8|A|1070
*
8OIR|1|B8|U|1137
8OIR|1|B8|U|1138
8OIR|1|B8|C|1139
8OIR|1|B8|G|1140
*
8OIR|1|B8|C|1152
8OIR|1|B8|U|1153
*
8OIR|1|B8|A|1175
8OIR|1|B8|G|1176
*
8OIR|1|B8|C|1245
8OIR|1|B8|G|1246
8OIR|1|B8|G|1247
8OIR|1|B8|A|1248
8OIR|1|B8|A|1249
8OIR|1|B8|C|1250
8OIR|1|B8|A|1251
8OIR|1|B8|A|1252
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain B7
- E-site tRNA
- Chain BD
- 39S ribosomal protein L27, mitochondrial
- Chain BE
- 39S ribosomal protein L28, mitochondrial
- Chain BI
- 39S ribosomal protein L33, mitochondrial
- Chain BK
- 39S ribosomal protein L35, mitochondrial
- Chain BL
- 39S ribosomal protein L2, mitochondrial
- Chain BT
- 39S ribosomal protein L15, mitochondrial
Coloring options: