J5_8OIT_001
3D structure
- PDB id
- 8OIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAA*UAUAC*GAA*UA*UG
- Length
- 15 nucleotides
- Bulged bases
- 8OIT|1|B8|A|158, 8OIT|1|B8|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8OIT_001 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.1351
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8OIT|1|B8|C|157
8OIT|1|B8|A|158
8OIT|1|B8|A|159
*
8OIT|1|B8|U|171
8OIT|1|B8|A|172
8OIT|1|B8|U|173
8OIT|1|B8|A|174
8OIT|1|B8|C|175
*
8OIT|1|B8|G|188
8OIT|1|B8|A|189
8OIT|1|B8|A|190
*
8OIT|1|B8|U|635
8OIT|1|B8|A|636
*
8OIT|1|B8|U|1010
8OIT|1|B8|G|1011
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BA
- 39S ribosomal protein L22, mitochondrial
- Chain BH
- 39S ribosomal protein L32, mitochondrial
- Chain BN
- 39S ribosomal protein L4, mitochondrial
- Chain BR
- 39S ribosomal protein L13, mitochondrial
- Chain BY
- 39S ribosomal protein L20, mitochondrial
- Chain BZ
- 39S ribosomal protein L21, mitochondrial
- Chain Br
- 39S ribosomal protein L42, mitochondrial
- Chain Bs
- 39S ribosomal protein L43, mitochondrial
Coloring options: