J5_8OVE_004
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GC*GCA(OMG)AU(OMC)
- Length
- 23 nucleotides
- Bulged bases
- 8OVE|1|BA|U|1607
- QA status
- Modified nucleotides: OMC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8OVE_004 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.1224
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OVE|1|BA|G|755
8OVE|1|BA|G|756
8OVE|1|BA|A|757
8OVE|1|BA|G|758
8OVE|1|BA|U|759
8OVE|1|BA|OMC|760
*
8OVE|1|BA|G|919
8OVE|1|BA|G|920
8OVE|1|BA|A|921
8OVE|1|BA|C|922
*
8OVE|1|BA|G|1061
8OVE|1|BA|U|1062
8OVE|1|BA|U|1063
8OVE|1|BA|C|1064
*
8OVE|1|BA|G|1546
8OVE|1|BA|C|1547
*
8OVE|1|BA|G|1602
8OVE|1|BA|C|1603
8OVE|1|BA|A|1604
8OVE|1|BA|OMG|1605
8OVE|1|BA|A|1606
8OVE|1|BA|U|1607
8OVE|1|BA|OMC|1608
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BN
- 60S ribosomal protein L13
- Chain BQ
- Ribosomal protein L15
- Chain Bb
- 60S ribosomal protein L27a
- Chain Bc
- 60S ribosomal protein L28, putative
- Chain Bi
- 60S ribosomal protein L32, putative
- Chain Br
- 60S ribosomal protein L4
Coloring options: