J5_8P09_001

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

8P09|1|2|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8P09_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1105

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8P09|1|2|C|30
8P09|1|2|U|31
8P09|1|2|U|32
8P09|1|2|G|33
8P09|1|2|U|34
*
8P09|1|2|A|511
8P09|1|2|A|512
8P09|1|2|A|513
8P09|1|2|U|514
8P09|1|2|A|515
8P09|1|2|A|516
8P09|1|2|C|517
*
8P09|1|2|G|548
8P09|1|2|G|549
8P09|1|2|A|550
8P09|1|2|A|551
8P09|1|2|U|552
8P09|1|2|G|553
*
8P09|1|2|C|582
8P09|1|2|C|583
8P09|1|2|A|584
8P09|1|2|U|585
*
8P09|1|2|A|631
8P09|1|2|U|632
8P09|1|2|A|633
8P09|1|2|G|634

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S9

Chain Z

40S ribosomal protein S23

Chain i

40S ribosomal protein S30