J5_8P2H_005
3D structure
- PDB id
- 8P2H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8P2H|1|A|G|1785, 8P2H|1|A|G|1790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8P2H_005 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.07
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8P2H|1|A|G|1718
8P2H|1|A|C|1719
8P2H|1|A|A|1720
8P2H|1|A|A|1721
8P2H|1|A|A|1722
8P2H|1|A|A|1723
8P2H|1|A|U|1724
8P2H|1|A|G|1725
8P2H|1|A|A|1726
*
8P2H|1|A|U|1750
8P2H|1|A|G|1751
*
8P2H|1|A|C|1778
8P2H|1|A|C|1779
*
8P2H|1|A|G|1783
8P2H|1|A|U|1784
8P2H|1|A|G|1785
8P2H|1|A|A|1786
8P2H|1|A|A|1787
8P2H|1|A|U|1788
8P2H|1|A|A|1789
8P2H|1|A|G|1790
8P2H|1|A|G|1791
*
8P2H|1|A|C|2015
8P2H|1|A|A|2016
8P2H|1|A|C|2017
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain H
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L14
- Chain S
- 50S ribosomal protein L19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: