J5_8P2K_001

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)

Length

26 nucleotides

Bulged bases

8P2K|1|A2|C|594

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8P2K_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1282

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8P2K|1|A2|C|30
8P2K|1|A2|U|31
8P2K|1|A2|U|32
8P2K|1|A2|G|33
8P2K|1|A2|PSU|34
*
8P2K|1|A2|A|522
8P2K|1|A2|A|523
8P2K|1|A2|A|524
8P2K|1|A2|U|525
8P2K|1|A2|A|526
8P2K|1|A2|A|527
8P2K|1|A2|C|528
*
8P2K|1|A2|G|559
8P2K|1|A2|G|560
8P2K|1|A2|A|561
8P2K|1|A2|A|562
8P2K|1|A2|U|563
8P2K|1|A2|G|564
*
8P2K|1|A2|C|593
8P2K|1|A2|C|594
8P2K|1|A2|A|595
8P2K|1|A2|U|596
*
8P2K|1|A2|A|642
8P2K|1|A2|U|643
8P2K|1|A2|A|644
8P2K|1|A2|OMG|645

Current chains

Chain A2

18s rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ai

40S ribosomal protein S9

Chain Aw

40S ribosomal protein S23