J5_8P9A_018

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

8P9A|1|sR|U|639, 8P9A|1|sR|U|694, 8P9A|1|sR|C|696, 8P9A|1|sR|U|742, 8P9A|1|sR|U|813, 8P9A|1|sR|G|815, 8P9A|1|sR|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_47977.1

Basepair signature

cWW-F-F-F-F-F-tWW-cWW-F-cWW-F-F-F-cWW-cSH-F-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

8P9A|1|sR|A|636
8P9A|1|sR|C|637
8P9A|1|sR|U|638
8P9A|1|sR|U|639
8P9A|1|sR|U|640
8P9A|1|sR|G|641
*
8P9A|1|sR|U|693
8P9A|1|sR|U|694
8P9A|1|sR|U|695
8P9A|1|sR|C|696
8P9A|1|sR|C|697
8P9A|1|sR|U|698
*
8P9A|1|sR|A|740
8P9A|1|sR|C|741
8P9A|1|sR|U|742
8P9A|1|sR|U|743
8P9A|1|sR|U|744
*
8P9A|1|sR|A|807
8P9A|1|sR|U|808
8P9A|1|sR|A|809
8P9A|1|sR|G|810
8P9A|1|sR|A|811
8P9A|1|sR|A|812
8P9A|1|sR|U|813
8P9A|1|sR|A|814
8P9A|1|sR|G|815
8P9A|1|sR|G|816
8P9A|1|sR|A|817
*
8P9A|1|sR|U|854
8P9A|1|sR|A|855
8P9A|1|sR|A|856
8P9A|1|sR|U|857
8P9A|1|sR|G|858
8P9A|1|sR|A|859
8P9A|1|sR|U|860

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain c1

40S ribosomal protein S11-A

Chain c3

40S ribosomal protein S13

Chain d2

40S ribosomal protein S22-A

Chain s4

40S ribosomal protein S4-A

Chain s7

40S ribosomal protein S7-A